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Table 5 Delftia phage RG-2014 gene prediction

From: Complete genome sequence of lytic bacteriophage RG-2014 that infects the multidrug resistant bacterium Delftia tsuruhatensis ARB-1

Gene Strand Number of codons Predicted function Organism with best match N4 genea Gene accession no. % Idb E-valueb
1 + 101 Conserved hypothetical protein Erwinia phage Ea9–2 – AIU44254 32 0.002
2 + 139 Conserved hypothetical protein Achromobacter phage JWdelta 2 AHC56518 36 2e-21
3 + 121 Hypothetical protein – – – – –
4 + 122 Conserved hypothetical protein Roseovarius sp. phage 1 14 CBW47037 57 3e-45
5 + 109 Hypothetical protein – – – – –
6 + 115 Hypothetical protein – – – – –
7 – 104 Hypothetical protein – – – – –
8 + 105 Hypothetical protein – – – – –
9 + 50 Hypothetical protein – – – – –
10 + 69 Hypothetical protein – – – – –
11 + 186 Conserved Hypothetical protein Pithovirus sibericum – YP 009001006 32 3e-22
12 + 285 Conserved hypothetical protein Achromobacter sp. – CYTR01000018 38 2e-26
13 + 108 Conserved hypothetical protein Escherichia phage phAPEC8 3 YP_007348409 29 3e-04
14 + 137 Hypothetical protein – – – – –
15 + 89 Hypothetical protein – – – – –
16 + 44 Hypothetical protein – – – – –
17 + 77 Hypothetical protein – – – – –
18 + 142 Conserved hypothetical protein Achromobacter phage øAxp-3 – YP_009148381 55 3e-37
19 + 193 Hypothetical protein – – – – –
20 + 76 Conserved hypothetical protein Pseudomonas phage PPpw-3c – YP_008873216 40 5e-09
21 + 217 Hypothetical protein – – – – –
22 + 272 RNA polymerase I subunit Erwinia vB EamP Rexella 15 ANJ65251 54 1e-102
23 + 432 RNA polymerase II subunit Erwinia phage Ea9–2 16 AAL71577 47 1e-135
24 + 181 Virion decoration protein Achromobacter phage øAxp-3 17 YP_009208670 36 1e-10
25 + 157 Hypothetical protein – – – – –
26 + 155 Hypothetical protein – – – – –
27 + 122 Hypothetical protein – – – – –
28 + 82 Hypothetical protein – – – – –
29 + 80 Hypothetical protein – – – – –
30 + 115 Hypothetical protein – – – – –
31 + 242 Hypothetical protein – – – – –
32 + 209 Hypothetical protein – – – – –
33 + 359 Conserved hypothetical protein Erwinia phage Ea9–2 24 AHI60096 46 7e-104
34 + 127 Conserved hypothetical protein Achromobacter phage øAxp-3 – YP009208682 41 7e-11
35 + 92 Hypothetical protein – – – – –
36 + 405 Conserved hypothetical protein Escherichia phage N4 25 ABK54394 39 1e-86
37 + 170 dCTP deaminase Escherichia phage Bp4 26 AHN83412 51 4e-53
38 + 78 Hypothetical protein – – – – –
39 + 124 Hypothetical protein – – – – –
40 + 140 Hypothetical protein – – – – –
41 + 169 Hypothetical protein – – – – –
42 + 121 Hypothetical protein – – – – –
43 + 103 Hypothetical protein – – – – –
44 + 73 Hypothetical protein – – – – –
45 + 317 Thymidylate synthase Salmonella phage SEGD1c – KU726251 48 2e-101
46 + 104 Conserved hypothetical protein Escherichia phage N4 35 YP_950513 59 1e-36
47 + 135 Conserved hypothetical protein Paenibacillus phage PG1c – YP_008129928 66 5E-54
48 + 197 Nucleotide pyrophospho-hydrolase Pseudomonas phage PaMx74c – YP_009199508 33 3e-13
49 + 436 DNA helicase Achromobacter phage JWdelta 37 AHC56567 48 4e-137
50 + 172 Conserved hypothetical protein Achromobacter phage JWalpha 38 YP_009004756 34 2e-27
51 + 884 DNA polymerase Escherichia phage N4 39 ABK54408 60 0.0
52 + 127 Hypothetical protein – – – – –
53 + 286 Conserved Hypothetical protein Nitrincola phage 1 M3–16 – YP 009037286 47 1e-12
54 + 327 Conserved hypothetical protein Escherichia phage G7C 41 AEL79653 45 7e-97
55 + 724 DNA primase Achromobacter phage øAxp-3 42 ALA45517 62 0.0
56 + 249 Conserved hypothetical protein Escherichia phage N4 43 ABK54413 57 3e-100
57 + 253 Single-stranded DNA-binding protein Erwinia phage S6 44 AEJ81593 38 5e-37
58 + 372 Conserved hypothetical protein Salmonella phage FSL_SP-076 – YP_008240188 434 4e-24
59 + 61 Hypothetical protein – – – – –
60 + 65 Hypothetical protein – – – – –
61 + 235 Hypothetical protein – – – – –
62 + 102 Hypothetical protein – – – – –
63 + 59 Hypothetical protein – – – – –
64 + 98 Conserved Hypothetical protein Bacillus phage SP-10 – YP 007003301 40 3e-10
65 + 288 Possible transcriptional regulator Burkholderia phage AH2c   AEY69538 38 5e-44
66 + 110 Hypothetical protein – – – – –
67 + 172 Hypothetical protein Deftia phage øW-143 – YP_003359016 39e 1e-10
68 – 3413 Virion RNA polymerase Achromobacter phage øAxp-3 50 ALA45523 42 0.0
69 – 712 Lysozyme-like domain virion structural protein Escherichia phage ECBP1 51 AFR52010 25 5e-18
70 – 135 Conserved hypothetical protein Achromobacter phage JWdelta – AHC56583 75 2e-38
71 – 921 Conserved hypothetical protein Achromobacter phage øAxp-3 53 ALA45526 36 1e-168
72 – 300 Virion structural protein Escherichia phage N4 54 AAO24827 50 2e-101
73 – 265 Conserved hypothetical protein Achromobacter phage øAxp-3 55 ALA45528 38 3e-47
74 – 411 Major capsid protein Achromobacter phage øAxp-3 56 ALA45529 66 0.0
75 – 281 Conserved hypothetical protein Escherichia phage IME11 57 AFV29058 38d 7e-42
76 – 116 Hypothetical protein Erwinia phage S6 58 YP_007005822 71e 0.006
77 – 138 Conserved Hypothetical protein Roseovarius sp. 217 phage 1 – CBW47064 28 0.002
78 – 766 Portal protein Erwinia phage Frozen 59 ANJ65209 59 0.0
79 – 170 Lysis / possible Rz-like spanin Achromobacter phage JWalpha 60 AHC94031 40 4e-21
80 – 201 Lysis / N-acetylmuramidase Escherichia phage G7C 61 AEL79672 52 7e-71
81 – 108 Conserved hypothetical protein Escherichia phage N4 63 ABK54424 34 1e-17
82 – 416 Conserved hypothetical protein Achromobacter phage øAxp-3 64 ALA45537 64 0.0
83 – 1388 Tail sheath and receptor binding virion protein Achromobacter phage øAxp-3 65 ALA45538 51 0.0
84 – 140 Hypothetical protein – – – – –
85 – 234 Possible virion appendage protein Erwinia phage Ea9–2 66 AHI60147 44d 2e-67
86 – 536 Large terminase subunit Escherichia phage ECBP1 68 AFR52033 61 0.0
87 – 228 Conserved hypothetical protein Escherichia phage N4 69 ABK54430 46 2e-61
88 – 340 Conserved hypothetical protein Achromobacter phage øAxp-3 49 ALA45543 34 1e-17
  1. a E. coli phage N4 is the best characterized and therefore the prototypical member of this phage group
  2. b% identity and e-value determined by BLASTp at NCBI web site; unless otherwise noted, values are listed if the patch of similarity includes ≥60% of the protein
  3. cAll phages in this column are in the N4-like group except AH2, øW-14, SEGD1, PG1, PaMx74 and PPpw-3
  4. dSequence similarity only in N-terminal region
  5. eSequence similarity only in C-terminal region
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Environmental Microbiome

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